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How To Install idba On Parrot 3.7

To install idba just follow these instructions.

Install idba

iterative De Bruijn Graph De Novo short read assembler for transcriptome for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms.Parrot 3.7science1.1.3-1
sudo apt-get install idba

Which will install idba and any other packages on which it depends.

Package Data

Packageidba
Version1.1.3-1
MaintainerDebian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Home pagehttps://github.com/loneknightpy/idba
Descriptioniterative De Bruijn Graph De Novo short read assembler for transcriptome for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms.
Distroparrot
Releasejollyroger
Repomain
Sectionscience

Dependencies